| Paclitaxel [1] |
| PAN-genome [2] |
| Parsimony [1] |
| Partial density of state [1] |
| Pastid Genome [1] |
| Pathogen [2] |
| Pathogenesis-related gene [2] |
| Pathway analysis [2] |
| pathway analysis [1] |
| Pattern recognition receptors [2] |
| Peroxiredoxin [2] |
| Personalized Medicine [1] |
| PGPM [2] |
| PGPR [4] |
| PGPRs [2] |
| Phaeophyceae [1] |
| Phaeophyta [2] |
| Pharmacogenomics [1] |
| Pharmacoproteomics [1] |
| Phenetics [2] |
| Phenolics [1] |
| Phosphate transporter [1] |
| Phosphoinositide-3 kinase [2] |
| Photobioreactors [2] |
| Photographic films [1] |
| Photosynthetic microbial fuel cells [2] |
| Phylogenetic [2] |
| Phylogenetic analysis [3] |
| Phylogenetic species concept [2] |
| Phylogenetic tree [2] |
| Phylogenetics [2] |
| phylogenetics [1] |
| Phylogeny [10] |
| phylogeny [4] |
| Phylogeny Reconstruction [1] |
| Phylogeography [3] |
| phylogeography [1] |
| Physico-chemical parameter [1] |
| Physio-chemical properties [1] |
| physiological trait [2] |
| physiological traits [2] |
| Phytohormones [2] |
| phytohormones [2] |
| Phytopathogens [2] |
| Phytoremediation [6] |
| phytoremediation [1] |
| Phytotoxicity [2] |
| PI3K/ [1] |
| PIC: Polymorphism Information Content [1] |
| Pioneer species [1] |
| PKM2 [1] |
| Planococcaceae [2] |
| Planomicrobium okeanokoites [2] |
| Plant [1] |
| plant bacterium interaction [2] |
| Plant chromosome [1] |
| Plant defense [4] |
| Plant defense regulation [2] |
| Plant development and abiotic stress [1] |
| Plant Dna [1] |
| plant extract [1] |
| Plant gene [1] |
| Plant Genome [1] |
| Plant growth [4] |
| Plant Growth Promoting Bacteria [1] |
| Plant growth promoting bacteria [1] |
| plant growth promoting bacteria [2] |
| Plant growth promoting rhizobacteria [1] |
| plant growth-promoting bacteria [2] |
| Plant immunity [1] |
| Plant Medicinal Product [1] |
| Plants [2] |
| Plants (botany) [1] |
| Politics [1] |
| pollen [1] |
| Pollutants [2] |
| Polyamine [2] |
| Polyp [1] |
| Polysphincta [1] |
| Population structures [1] |
| Post-translation modifications [2] |
| Power density [2] |
| pp-Posterior probability [2] |
| Preclinical Study [1] |
| Preconditioning [2] |
| Priming [6] |
| priming [2] |
| Pristimerin [1] |
| Process-based regulation [2] |
| Product-based regulation [2] |
| Promoter analysis [2] |
| prostate Cancer [1] |
| Protein Bax [1] |
| protein Bax [1] |
| protein bcl 2 [1] |
| protein bcl xl [1] |
| Protein engineering [2] |
| Protein Expression [1] |
| protein hydrolysates [2] |
| Protein Inhibitor Of Activated Stat [1] |
| Protein Interaction [1] |
| protein p53 [1] |
| Protein Sh2 [1] |
| Protein Structure [1] |
| protein tyrosine kinase [1] |
| Proteins [2] |
| proteins [2] |
| Proteomics [1] |
| Protoplast [2] |
| Pseudomonas [1] |
| Public [1] |
| Pucciniam triticina [1] |
| Pyrimidinone derivative [1] |
| qRT-PCR expression [2] |
| Quercetin [1] |
| questionnaire [2] |
| rbcl [1] |
| reactive oxygen met [1] |
| Reactive Oxygen Metabolite [3] |
| Reactive oxygen species [4] |
| Real time PCR [2] |
| Receptor Tyrosine Kinase [1] |
| Receptor tyrosine kinase [1] |
| Receptor tyrosine kinases [1] |
| Recombination [2] |
| Red alga [1] |
| Red algae [1] |
| Red seaweeds [1] |
| Reforestation [1] |
| regeneration status [2] |
| Religion [1] |
| Remediation [2] |
| reproductive biology [1] |
| Reproductive stage [2] |
| Resistance [2] |
| Resistant starch [2] |
| Reverse Transcription Polymerase Chain Reaction [1] |
| Rhamnan sulfate [2] |
| Rheum australe [2] |
| Rhizobium sp. [2] |
| Rhizosphere [3] |
| rhizosphere [2] |
| Rhodamine B [2] |
| Rhododendron [5] |
| Rhododendron arboreum [2] |
| Rhodophyta [1] |
| Rightism [1] |
| RNA [1] |
| RNA 16S [2] |
| RNA sequencing [3] |
| RNA silencing [2] |
| RNA, Ribosomal, 16S [2] |
| RNAseq [5] |
| Robust RNAi [1] |
| ROS [5] |
| Rosette [1] |
| S961 [1] |
| salicylic acids [2] |
| Salinity [2] |
| salt stress [2] |
| Salvadora oleoides [1] |
| SAR [2] |
| Sargassaceae [1] |
| Sargassum [1] |
| SARS-CoV-2 [2] |
| Scaffolds [1] |
| Scaffolds (biology) [1] |
| Scanning electron microscopy [2] |
| schizophrenia [1] |
| SDG [2] |
| Seaweed [8] |
| seaweed [2] |
| seaweed extracts [2] |
| seaweed] [1] |
| Seaweeds [2] |
| Secondary metabolites [1] |
| Secondary silencing [1] |
| sediment [2] |
| seed size/weight [1] |
| Seedling culture [2] |
| selection [1] |
| Senescence [2] |
| Sensing applications [1] |
| Sequence alignment [1] |
| Sequence Analysis, DNA [2] |
| sequence homology [2] |
| Sequence similarity search [1] |
| Sere [1] |
| sgRNA [3] |
| Signal peptide [1] |
| Signaling [4] |
| Silver nanoparticles [2] |
| Small RNA [1] |
| Small RNA sequencing [2] |
| Smart agriculture [2] |
| SNPs network [2] |
| Sociology of science [1] |
| Software [1] |
| soil [2] |
| soil health [2] |
| Soil microbiome [2] |
| Soil moisture [1] |
| Solutions [1] |
| Southern blotting [2] |
| Southern Hemisphere [2] |
| Spacer DNA [1] |
| Spacer Dna [1] |
| Speciation [1] |
| Species discovery [2] |
| Spodoptera Litura [1] |
| Src kinase [1] |
| SRR markers [2] |
| SSR [3] |
| St [1] |
| Stabilizing properties [1] |
| Starch [2] |
| Stat3 Protein [1] |
| Stress [2] |
| Stress conditions [2] |
| stress tolerance [2] |
| Structural organization [1] |
| Sulphation [1] |
| SUMO [2] |
| SUMOylation [2] |
| Sundarbans delta [2] |
| Superoxide dismutase [2] |
| Sustainability [4] |
| Symbionts [2] |
| Synapomorphy [2] |
| Synonymous codons [2] |
| Synthesis [2] |
| Systematics [1] |
| systematics [1] |
| Systemic acquired resistance [2] |
| Systemic resistance [2] |
| Taxaceae and Cephalotaxaceae are the two economically important conifer families. Over the years there has been much controversy over the issue of merging these families. The position of Amentotaxus and Torreya is also ambiguous. Some authors consider them closer to Taxaceae while others deemed them to fit within Cephalotaxaceae. Still, others prefer to raise them to their own tribe. Different morphological, anatomical, embryological and phylogenetic evidence supports one or the other view, making the precise delineation between them unresolved. Here we used an RNAseq?based approach to obtain orthologous genes across the selected species to reconstruct a more robust phylogeny of these families. A total of 233.123 million raw reads were de novo assembled to generate nine different transcript assemblies for the corresponding species. Of the 940 191 assembled transcripts across nine species, we generated 409 734 unigenes, which were clustered into orthologous groups. A total of 331 single?copy complete orthologous groups were selected for phylogenetic analysis. Maximum?likelihood, maximum?parsimony and Bayesian phylogenetic trees showed a sister relationship between Taxaceae and Cephalotaxaceae. Our analysis supports their distinctiveness at the family level and also shows that Amentotaxus and Torreya fit within Cephalotaxaceae. [1] |
| Taxonomy [1] |
| Taxus contorta [3] |
| TCP transcription factor [2] |
| temperature profile [1] |
| Tentacles [1] |
| Terminal heat [2] |
| Terpenoids [1] |
| testosterone [1] |
| Tetrahydrocannabinol [1] |
| Theoretical approach [1] |
| Therapeutics [1] |
| Thermal stability [2] |
| Thermodynamic stability [2] |
| Thermodynamics [1] |
| Time dependent density functional theory [1] |
| Tissue [3] |
| Tissue engineering [3] |
| Tolerance [2] |
| Total amino acids [1] |
| Toxoplasma [1] |
| transcriptional modules [1] |
| Transcriptional regulation [2] |
| Transcriptome [7] |
| transcriptome [1] |
| transcriptome dynamics [1] |
| Transcriptome sequencing [2] |
| Transesterification [2] |
| Transgene-free [2] |
| Transgenic [2] |
| Transgenic tobacco [1] |
| Transitive RNAi [1] |
| Transitivity [1] |
| Transmission electron microscopy [1] |
| Tree of life [1] |
| Trentepohlia annulata [1] |
| Trentepohlialean [1] |
| Trichoderma [2] |
| Triterpenes [1] |
| Triticum aestivum [1] |
| tropical evergreen forests [2] |
| tufA [1] |
| TUGMS: Tea Unigene Micro Satellite [1] |
| Tumor Cell Line [1] |
| Tumor protein; [1] |
| Turbinaria (Phaeophyceae) [1] |
| Turbinaria Ornata [1] |
| tyrosine hydrolase [1] |
| U. wallichiana [2] |
| Ulmus wallichiana [2] |
| Ulotrichales [1] |
| Ultraviolet visible spectroscopy [1] |
| Ulvales [1] |
| Ulvella [1] |
| Ulvella leptochaete [1] |
| Ulvellaceae [1] |
| Ulvophyceae [1] |
| Unclassified Drug [1] |
| Unclassified drug [2] |
| Underutilized cereal crops [2] |
| Unindexed drug [1] |
| urdbean [2] |
| UV visible spectroscopy [1] |
| vegetation layers [2] |
| viability [1] |
| virtual study [2] |
| Vitamin A [2] |
| Vitamin C [2] |
| Vitex negundo [1] |
| waka [1] |
| Wastewater [3] |
| Wastewater treatment [2] |
| Web tools [1] |
| Wheat [8] |
| wheat [4] |
| wild population [1] |
| Winter adaptation [1] |
| Wnt signaling [1] |
| Wound dressings [1] |
| X ray diffraction [1] |
| Yield [2] |
| yield [2] |
| Zinc [1] |
| Zinc oxide [1] |
| Zinc oxide nanoparticles [1] |
| Zinc oxide nanostruc [1] |
| Zoanthids [1] |
| Zoanthus pulchellus [1] |
| Polysaccharides [1] |
| TNF [1] |
| β-catenin [1] |
