School Of Basic And Applied Sciences

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Author: search.filters.author.Yadav, Sudesh KumarHas files: No

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    Nanotechnology as a powerful tool in plant sciences: Recent developments, challenges and perspectives
    (Elsevier B.V., 2023-08-24T00:00:00) Kumari, Avnesh; Rana, Varnika; Yadav, Sudesh Kumar; Kumar, Vinay
    In today's global climate emergency, agricultural practices are becoming increasingly unsustainable. There are a number of alarming issues that require immediate action, including soil erosion, excessive use of natural resources, biodiversity loss, and an explosion of population. Although agriculture is heavily modernized, with traditional approaches, it is not possible to meet these challenges due to different landscapes, high nutrition demand, and a lack of technology. Aside from adversely affecting agriculture, chemical use has also resulted in serious health issues and undesirable effects on the ecosystem. As a result, nanotechnology will play a significant role in delivering a well-organized, sustainable agricultural industry by reducing chemicals and addressing existing problems. A quick disease diagnosis, improved plant nutrient absorption, and increased plant capability to absorb nutrients can be achieved by nanotechnology in the food and agriculture industries. Agricultural plants can be protected from insects and pests by nanotechnology acting as sensors to monitor soil and water quality. Despite their potential, researchers have been unable to understand how these compounds operate, since NPs either enhance growth or cause cytotoxicity depending on how much concentration is applied. In this article, we present the most promising nanoparticles used in abiotic stress management and gene editing of plants, as well as novel nanobionic approaches for improving plant functions and organelles. � 2023 The Authors
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    Transcriptome analysis of ovules offers early developmental clues after fertilization in Cicer arietinum L.
    (Springer Science and Business Media Deutschland GmbH, 2023-05-11T00:00:00) Singh, Reetu; Shankar, Rama; Yadav, Sudesh Kumar; Kumar, Vinay
    Chickpea (Cicer arietinum L.) seeds are valued for their nutritional scores and limited information on the molecular mechanisms of chickpea fertilization and seed development is available. In the current work, comparative transcriptome analysis was performed on two different stages of chickpea ovules (pre- and post-fertilization) to identify key regulatory transcripts. Two-staged transcriptome sequencing was generated and over 208 million reads were mapped to quantify transcript abundance during fertilization events. Mapping to the reference genome showed that the majority (92.88%) of high-quality Illumina reads were aligned to the chickpea genome. Reference-guided genome and transcriptome assembly yielded a total of 28,783 genes. Of these, 3399 genes were differentially expressed after the fertilization event. These involve upregulated genes including a protease-like secreted in CO(2) response (LOC101500970), amino acid permease 4-like (LOC101506539), and downregulated genes MYB-related protein 305-like (LOC101493897), receptor like protein 29 (LOC101491695). WGCNA analysis and pairwise comparison of datasets, successfully constructed four co-expression modules. Transcription factor families including bHLH, MYB, MYB-related, C2H2 zinc finger, ERF, WRKY and NAC transcription factor were also found to be activated after fertilization. Activation of these genes and transcription factors results in the accumulation of carbohydrates and proteins by enhancing their trafficking and biosynthesis. Total 17 differentially expressed genes, were randomly selected for qRT-PCR for validation of transcriptome analysis and showed statistically significant correlations with the transcriptome data. Our findings provide insights into the regulatory mechanisms underlying changes in fertilized chickpea ovules. This work may come closer to a comprehensive understanding of the mechanisms that initiate developmental events in chickpea seeds after fertilization. � 2023, King Abdulaziz City for Science and Technology.
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    Genome recoding strategies to improve cellular properties: mechanisms and advances
    (Springer, 2020-11-19T00:00:00) Singh, Tanya; Yadav, Sudesh Kumar; Vainstein, Alexander; Kumar, Vinay
    The genetic code, once believed to be universal and immutable, is now known to contain many variations and is not quite universal. The basis for genome recoding strategy is genetic code variation that can be harnessed to improve cellular properties. Thus, genome recoding is a promising strategy for the enhancement of genome flexibility, allowing for novel functions that are not commonly documented in the organism in its natural environment. Here, the basic concept of genetic code and associated mechanisms for the generation of genetic codon variants, including biased codon usage, codon reassignment, and ambiguous decoding, are extensively discussed. Knowledge of the concept of natural genetic code expansion is also detailed. The generation of recoded organisms and associated mechanisms with basic targeting components, including aminoacyl-tRNA synthetase�tRNA pairs, elongation factor EF-Tu and ribosomes, are highlighted for a comprehensive understanding of this concept. The research associated with the generation of diverse recoded organisms is also discussed. The success of genome recoding in diverse multicellular organisms offers a platform for expanding protein chemistry at the biochemical level with non-canonical amino acids, genetically isolating the synthetic organisms from the natural ones, and fighting viruses, including SARS-CoV2, through the creation of attenuated viruses. In conclusion, genome recoding can offer diverse applications for improving cellular properties in the genome-recoded organisms. � 2020, Agricultural Information Institute, Chinese Academy of Agricultural Sciences.
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    Nanotechnology as a powerful tool in plant sciences: Recent developments, challenges and perspectives
    (Elsevier B.V., 2023-08-24T00:00:00) Kumari, Avnesh; Rana, Varnika; Yadav, Sudesh Kumar; Kumar, Vinay
    In today's global climate emergency, agricultural practices are becoming increasingly unsustainable. There are a number of alarming issues that require immediate action, including soil erosion, excessive use of natural resources, biodiversity loss, and an explosion of population. Although agriculture is heavily modernized, with traditional approaches, it is not possible to meet these challenges due to different landscapes, high nutrition demand, and a lack of technology. Aside from adversely affecting agriculture, chemical use has also resulted in serious health issues and undesirable effects on the ecosystem. As a result, nanotechnology will play a significant role in delivering a well-organized, sustainable agricultural industry by reducing chemicals and addressing existing problems. A quick disease diagnosis, improved plant nutrient absorption, and increased plant capability to absorb nutrients can be achieved by nanotechnology in the food and agriculture industries. Agricultural plants can be protected from insects and pests by nanotechnology acting as sensors to monitor soil and water quality. Despite their potential, researchers have been unable to understand how these compounds operate, since NPs either enhance growth or cause cytotoxicity depending on how much concentration is applied. In this article, we present the most promising nanoparticles used in abiotic stress management and gene editing of plants, as well as novel nanobionic approaches for improving plant functions and organelles. � 2023 The Authors
  • No Thumbnail Available
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    Transcriptome analysis of ovules offers early developmental clues after fertilization in Cicer arietinum L.
    (Springer Science and Business Media Deutschland GmbH, 2023-05-11T00:00:00) Singh, Reetu; Shankar, Rama; Yadav, Sudesh Kumar; Kumar, Vinay
    Chickpea (Cicer arietinum L.) seeds are valued for their nutritional scores and limited information on the molecular mechanisms of chickpea fertilization and seed development is available. In the current work, comparative transcriptome analysis was performed on two different stages of chickpea ovules (pre- and post-fertilization) to identify key regulatory transcripts. Two-staged transcriptome sequencing was generated and over 208 million reads were mapped to quantify transcript abundance during fertilization events. Mapping to the reference genome showed that the majority (92.88%) of high-quality Illumina reads were aligned to the chickpea genome. Reference-guided genome and transcriptome assembly yielded a total of 28,783 genes. Of these, 3399 genes were differentially expressed after the fertilization event. These involve upregulated genes including a protease-like secreted in CO(2) response (LOC101500970), amino acid permease 4-like (LOC101506539), and downregulated genes MYB-related protein 305-like (LOC101493897), receptor like protein 29 (LOC101491695). WGCNA analysis and pairwise comparison of datasets, successfully constructed four co-expression modules. Transcription factor families including bHLH, MYB, MYB-related, C2H2 zinc finger, ERF, WRKY and NAC transcription factor were also found to be activated after fertilization. Activation of these genes and transcription factors results in the accumulation of carbohydrates and proteins by enhancing their trafficking and biosynthesis. Total 17 differentially expressed genes, were randomly selected for qRT-PCR for validation of transcriptome analysis and showed statistically significant correlations with the transcriptome data. Our findings provide insights into the regulatory mechanisms underlying changes in fertilized chickpea ovules. This work may come closer to a comprehensive understanding of the mechanisms that initiate developmental events in chickpea seeds after fertilization. � 2023, King Abdulaziz City for Science and Technology.
  • No Thumbnail Available
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    Genome recoding strategies to improve cellular properties: mechanisms and advances
    (Springer, 2020-11-19T00:00:00) Singh, Tanya; Yadav, Sudesh Kumar; Vainstein, Alexander; Kumar, Vinay
    The genetic code, once believed to be universal and immutable, is now known to contain many variations and is not quite universal. The basis for genome recoding strategy is genetic code variation that can be harnessed to improve cellular properties. Thus, genome recoding is a promising strategy for the enhancement of genome flexibility, allowing for novel functions that are not commonly documented in the organism in its natural environment. Here, the basic concept of genetic code and associated mechanisms for the generation of genetic codon variants, including biased codon usage, codon reassignment, and ambiguous decoding, are extensively discussed. Knowledge of the concept of natural genetic code expansion is also detailed. The generation of recoded organisms and associated mechanisms with basic targeting components, including aminoacyl-tRNA synthetase�tRNA pairs, elongation factor EF-Tu and ribosomes, are highlighted for a comprehensive understanding of this concept. The research associated with the generation of diverse recoded organisms is also discussed. The success of genome recoding in diverse multicellular organisms offers a platform for expanding protein chemistry at the biochemical level with non-canonical amino acids, genetically isolating the synthetic organisms from the natural ones, and fighting viruses, including SARS-CoV2, through the creation of attenuated viruses. In conclusion, genome recoding can offer diverse applications for improving cellular properties in the genome-recoded organisms. � 2020, Agricultural Information Institute, Chinese Academy of Agricultural Sciences.
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    Flavonoid Secondary Metabolite: Biosynthesis and Role in Growth and Development in Plants
    (Springer, 2018) Kumar, Vinay; Suman, Upsana; Rubal; Yadav, Sudesh Kumar